This lesson is only available in Korean for now.
Dr. Son's mRNA Vaccine Design, First Steps I

One target decides
the five steps that follow

This is a protocol paper, not a results paper: six steps from fetching one sequence to virtual cloning, written down with tool names and thresholds. This part covers only the first step.
Using the spike protein P0DTC2, 1273 amino acids, you learn to find the address, fetch the sequence, and check that what you fetched is right. You compute for yourself why 21563 to 25384 is 3822, and how that meshes with the paper's 3819.
Python runs right inside this page. There is nothing to install.

๐Ÿ Python๐Ÿ—‚๏ธ accessions๐Ÿงฌ FASTA ๐Ÿ“ cross-checks๐Ÿชค pitfalls๐Ÿงพ reproducibility๐Ÿ‡ฌ๐Ÿ‡ง English
Start lesson 1 โ†’

How you'll learn

๐Ÿ—‚๏ธWrite the address first

Not a name but an accession number โ€” with its version, so the same bytes come back months later.

๐Ÿ“Let the numbers check each other

1273, 3819 and 3822 confirm one another. Any one of them must yield the other two.

๐ŸชคHunt the errors that never stop

Wrong species, wrong isoform and a stale version pass every format check. We learn to catch them anyway.

๐ŸงพWrite down what was not done

Every number here is a prediction. Lesson 20 draws the line between what can and cannot be said.

Full curriculum

01
ํ‘œ์  ํ•˜๋‚˜๊ฐ€ ๋‚˜๋จธ์ง€ ๋‹ค์„ฏ ๊ฑธ์Œ์„ ์ •ํ•œ๋‹ค
Step 1 ยท Fig. 4 ์˜ ์ฒซ ์นธ
โœ“
02
์ ‘๊ทผ๋ฒˆํ˜ธ โ€” ์ด๋ฆ„์ด ์•„๋‹ˆ๋ผ ์ฃผ์†Œ๋‹ค
Step 1 ยท P0DTC2 ยท YP_009724390.1 ยท NC_045512.2 ยท 43740568
โœ“
03
์„ธ ๊ฐœ์˜ ๋ฌธ โ€” UniProt ยท NCBI Protein ยท GenBank
Step 1 ยท ๊ฐ™์€ ์„œ์—ด์— ์ด๋ฅด๋Š” ์„œ๋กœ ๋‹ค๋ฅธ ์ž…๊ตฌ
โœ“
04
FASTA ๋ฅผ ํ•œ ๋ฐ”์ดํŠธ์”ฉ ์ฝ๋Š”๋‹ค โ€” ๋จธ๋ฆฌ๊ธ€์ด ๋จผ์ €๋‹ค
Step 1 ยท ์„œ์—ด ํŒŒ์ผ์˜ ์œ ์ผํ•œ ๊ทœ์น™
โœ“
05
์™œ ์ŠคํŒŒ์ดํฌ์ธ๊ฐ€ โ€” P0DTC2 ์™€ 1273 ์•„๋ฏธ๋…ธ์‚ฐ
Step 1 ยท UniProt P0DTC2 ยท 1273 aa
โœ“
06
๋‹จ๋ฐฑ์งˆ ์„œ์—ด๊ณผ CDS โ€” 21563 ์—์„œ 25384 ๊นŒ์ง€
Step 1 ยท GenBank NC_045512.2 ยท surface glycoprotein 21563~25384
โœ“
07
์†์„ ์›€์ง์ธ๋‹ค โ€” ๋จธ๋ฆฌ๊ธ€์„ ์ชผ๊ฐœ๊ณ  ์ž”๊ธฐ๋ฅผ ์„ผ๋‹ค
Step 1 ยท 1273 ์„ ์Šค์Šค๋กœ ํ™•์ธํ•˜๊ธฐ
โœ“
08
๊ธธ์ด ์‚ฐ์ˆ˜ โ€” 3822 ์ธ๋ฐ ๋…ผ๋ฌธ์€ 3819 ์ด๋ผ๊ณ  ์ ์—ˆ๋‹ค
Step 1 ์ขŒํ‘œ 21563~25384 ยท Step 4 ์ตœ์ ํ™” CDS 3819 nt
โœ“
09
๊ฑฐ๊พธ๋กœ ๋ฒˆ์—ญ โ€” ๋‹จ๋ฐฑ์งˆ ํ•˜๋‚˜์— CDS ๋Š” ์ˆ˜์—†์ด ๋งŽ๋‹ค
Step 1 ์—์„œ Step 4 ๋กœ ๋„˜์–ด๊ฐ€๋Š” ๋‹ค๋ฆฌ
โœ“
10
์  ๋’ค์˜ ์ˆซ์ž โ€” YP_009724390.1 ๊ณผ ์žฌํ˜„์„ฑ
Step 1 ยท YP_009724390.1 ยท NC_045512.2 ยท Gene ID 43740568
โœ“
11
PDB 6VXX โ€” ์„œ์—ด์ด ์•„๋‹ˆ๋ผ ๋ชจ์–‘์ด ํ•„์š”ํ•  ๋•Œ
Step 1 ยท PDB 6VXX ์‚ฌ์Šฌ AยทBยทC ยท Step 2 ElliPro ๋กœ ์ด์–ด์ง„๋‹ค
โœ“
12
ํ‘œ์ ์„ ๋ชจ๋ฅผ ๋•Œ โ€” ์œ ์ „์ฒด ์ „์ฒด๋ฅผ ํ›‘๋Š”๋‹ค
Step 1 ยท ์•Œ๋ ค์ง„ ํ‘œ์ ์ด ์—†์„ ๋•Œ์˜ ๊ฐˆ๋ž˜
โœ“
13
Clustal Omega โ€” ๋ณ€์ด๋ฅผ ๊ฒฌ๋ŽŒ ๋‚ด๋Š” ์ž๋ฆฌ ์ฐพ๊ธฐ
Step 1 ยท ํ‘œ์ ์„ ๋ชจ๋ฅผ ๋•Œ์˜ ๋‘˜์งธ ๊ฑธ์Œ
โœ“
14
์„ธ ๊ฐœ์˜ ์ฒด โ€” Prokka ยท ExPASy Translate ยท NCBI Virus
Step 1 ยท ํ›„๋ณด๋ฅผ ์ค„์—ฌ ๊ฐ€๋Š” ์ˆœ์„œ
โœ“
15
ํ•จ์ • ํ•˜๋‚˜ โ€” ์ข…์ด ๋‹ค๋ฅด๊ณ  ์ดํ˜•์ด ๋‹ค๋ฅด๊ณ  ํŒ์ด ๋‚ก์•˜๋‹ค
Step 1 ยท ํ˜•์‹ ๊ฒ€์‚ฌ๋ฅผ ํ†ต๊ณผํ•˜๋Š” ์„ธ ๊ฐ€์ง€ ์˜ค๋ฅ˜
โœ“
16
ํ•จ์ • ๋‘˜ โ€” ๋‹จ๋ฐฑ์งˆ ๋ฒˆํ˜ธ์™€ ์—ผ๊ธฐ ๋ฒˆํ˜ธ๋ฅผ ์„ž๋Š”๋‹ค
Step 1 ยท 1273 ์ธ๊ฐ€ 3822 ์ธ๊ฐ€
โœ“
17
์ „์žฅ์ด๋ƒ ๋‹ค์ค‘ ์—ํ”ผํ† ํ”„๋ƒ โ€” ๋‘ ๊ฐˆ๋ž˜์˜ ๊ฐ’
Step 1 ยท BNT162b2 ยท mRNA-1273 vs ์ด ๋…ผ๋ฌธ์˜ ๊ตฌ์กฐ์ฒด
โœ“
18
๊ณ„์‚ฐ ํ™˜๊ฒฝ๋„ ์„ค๊ณ„ ์กฐ๊ฑด์ด๋‹ค โ€” 16~32 ์ฝ”์–ด์™€ 2~3์‹œ๊ฐ„
Step 1 ยท ๋…ผ๋ฌธ์ด ์ ์–ด ๋‘” ํ•˜๋“œ์›จ์–ด ์š”๊ตฌ์™€ ์‹คํ–‰ ์‹œ๊ฐ„
โœ“
19
์ข…ํ•ฉ ์‹ค์Šต โ€” Step 1 ๋ธ”๋ก์„ ์ฒ˜์Œ๋ถ€ํ„ฐ ๋‹ค์‹œ ๊ทธ๋ฆฐ๋‹ค
Step 1 ยท Fig. 4 ์˜ ์ฒซ ์นธ์„ ์ฝ”๋“œ๋กœ
โœ“
20
๋งํ•  ์ˆ˜ ์žˆ๋Š” ๊ฒƒ๊ณผ ๋งํ•  ์ˆ˜ ์—†๋Š” ๊ฒƒ
Step 1 ์„ ๋งˆ์น˜๋ฉฐ โ€” ๊ทธ๋ฆฌ๊ณ  ์ด ๋…ผ๋ฌธ ์ „์ฒด์˜ ํ•œ๊ณ„
โœ“