This lesson is only available in Korean for now.
Dr. Son's Finding WRN, First Steps

Nobody guessed
this name in advance

In 2019, four teams independently arrived at the same gene: WRN. Switch it off in a colorectal cancer cell and the cell dies, while the normal cell beside it is fine β€” but only in cancers already carrying a fault called microsatellite instability (MSI).
That discovery came from a table, not from anyone's insight. 608 cell lines by 17,097 genes. The table is loaded into this page. Sort it yourself over 20 lessons and WRN is at the top.

🐍 PythonπŸ’€ synthetic lethality🎯 target discovery βœ‚οΈ CRISPR screens🧬 MSI-HπŸ“Š DepMap 24Q4πŸ‡¬πŸ‡§ English
Start lesson 1 β†’

How you'll learn

πŸ“ŠYou handle the real table

608 cell lines by 17,097 genes from DepMap, inside your browser. Data, not pictures.

πŸ’€Starting at synthetic lethality

We start from what a gene is. No biology class required. One question β€” why must both be lost?

πŸ₯‡Sorted by what

The same table, sorted twice. 7th by t, 1st by effect size. Half this course is about that sentence.

πŸ› οΈLearning by handling it

Every lesson has a laboratory widget β€” move the threshold, drop a tissue, flip the ranking, all by hand.

Full curriculum

01
μœ μ „μž ν•˜λ‚˜λ₯Ό 끄면 세포가 μ£½λŠ”λ‹€ β€” 단, κ·Έ μ•”μ—μ„œλ§Œ
Chan EM, et al. Nature 568:551-556 (2019) Β· DepMap 24Q4 세포주 608개
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02
닀리가 λ‘˜μ΄λΌ ν•˜λ‚˜λŠ” μžƒμ–΄λ„ λœλ‹€
Farmer H, et al. Nature 434:917-921 (2005) Β· Bryant HE, et al. Nature 434:913-917 (2005)
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03
볡사기가 κ³ μž₯ λ‚œ 세포 β€” ν˜„λ―ΈλΆ€μˆ˜μ²΄ λΆˆμ•ˆμ •
Cell Model Passports 세포주 608개 Β· MSI 43 Β· MSS 565
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04
2만 개λ₯Ό ν•œ 톡에 λ„£κ³  흔든닀
DepMap Avana 라이브러리 Β· μœ μ „μžλ‹Ή μ•ˆλ‚΄ RNA 4개
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05
0 κ³Ό βˆ’1 사이 β€” 점수 μ½λŠ” 법
Dempster JM, et al. Genome Biology 22:343 (2021) Β· Chronos
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06
세포주 Γ— μœ μ „μž β€” 지도 ν•œ μž₯
Tsherniak A, et al. Cell 170:564-576 (2017) Β· DepMap Public 24Q4
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07
ν‘œλ₯Ό λ‘˜λ‘œ κ°€λ₯Έλ‹€ β€” 43 λŒ€ 565
DepMap 24Q4 Γ— Cell Model Passports Β· κ²ΉμΉ˜λŠ” 세포주 608개
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08
차이λ₯Ό μž°λ‹€ β€” 평균차와 μ›°μΉ˜ t
Welch BL. Biometrika 34:28-35 (1947)
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09
쀄을 μ„Έμš΄λ‹€ β€” 그런데 λ¬΄μ—‡μœΌλ‘œ
DepMap 24Q4 μœ μ „μž 17,097개 Β· λ¬΄μž‘μœ„ ν‘œλ³Έ 1,000개
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10
ν™”μ‚° κ·Έλ¦Ό β€” 크기와 확싀함을 ν•œ μž₯에
DepMap 24Q4 μœ μ „μž 17,097개 μ „λΆ€
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11
1만 7천 번 물으면 855λ²ˆμ€ κ·Έλƒ₯ κ±Έλ¦°λ‹€
Benjamini Y, Hochberg Y. J R Stat Soc B 57:289-300 (1995)
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12
λͺ¨λ‘λ₯Ό μ£½μ΄λŠ” μœ μ „μžλŠ” ν‘œμ μ΄ μ•„λ‹ˆλ‹€
DepMap AchillesCommonEssentialControls Β· κ³΅ν†΅ν•„μˆ˜ 1,247개
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13
MSI λŠ” λŒ€μž₯에 λͺ°λ € μžˆλ‹€ β€” κ΅λž€
Cell Model Passports 쑰직 주석 Β· MSI 43개의 μΆœμ‹ 
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14
λŒ€μž₯ μ•ˆμ—μ„œλ§Œ λ‹€μ‹œ β€” κ΅λž€μ„ μ§€μš°λŠ” 법
λŒ€μž₯ 세포주 37개 Β· MSI 11 λŒ€ MSS 26
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15
라벨이 같아도 병이 λ‹€λ₯΄λ‹€ β€” ν˜ˆμ•‘ 아홉 개
ν˜ˆμ•‘Β·λ¦Όν”„κ³„ 세포주 71개 Β· MSI 9 λŒ€ MSS 62
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16
μ™œ ν•˜ν•„ WRN 인가 β€” κΈΈμ–΄μ§„ TA 반볡
van Wietmarschen N, et al. Nature 586:292-298 (2020)
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17
손이 λ‘˜μΈ λ‹¨λ°±μ§ˆ β€” μ–΄λŠ μͺ½μ„ λ¬Άμ–΄μ•Ό ν•˜λ‚˜
Chan EM, et al. Nature 568:551-556 (2019) Β· ν—¬λ¦¬μΌ€μ΄μŠ€-λΆˆν™œμ„± μ‹€ν—˜
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18
선을 어디에 κΈ‹λ‚˜ β€” λ¬Έν„±κ³Ό ν™˜μž 수
DepMap 24Q4 세포주 608개 Β· λ¬Έν„± βˆ’2.0 λΆ€ν„° 0 κΉŒμ§€
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19
2019년을 μ²˜μŒλΆ€ν„° λ‹€μ‹œ
μ’…ν•© μ‹€μŠ΅ Β· ν‘œ ν•œ μž₯μ—μ„œ 이름 ν•˜λ‚˜κΉŒμ§€
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20
말할 수 μžˆλŠ” 것과 말할 수 μ—†λŠ” 것
정리 Β· 이 ν‘œμ—μ„œ λ‚˜μ˜¨ 결둠의 λ²”μœ„
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