Prof. Kwon's TCR-HLA and CD4/CD8, First Steps

Not the fragment. Not the plate.
The one surface the two make together.

An antibody sees one thing. A T cell receptor always sees two — a fragment, and the plate holding it.
So the same fragment on a different plate is a different thing. That one rule, found in 1974, explains transplant rejection and checkpoint-inhibitor resistance in the same breath.
These twenty lessons stay on that single interface. You count VDJdb's 181,411 rows and 24,500 IMGT/HLA alleles yourself, and confirm that what differs between people sits in the groove alone, while the loop CD4 and CD8 hold on to barely moves — and that more than half of the table piles onto a single plate.

🤝 the pMHC pair🧩 CD4 · CD8⏱️ kinetic proofreading 🧬 HLA polymorphism🐍 Python🔬 VDJdb · IMGT/HLA🇬🇧 English
Start lesson 1 →

How you'll learn

🧬Measure where the polymorphism is

We take all 5,839 HLA-A alleles and compute entropy position by position. The groove (α1·α2) reads 0.21 and 0.25; the platform (α3) reads 0.08. What differs between people is only the face the TCR touches.

🧩The seven residues CD8 grabs

Positions 223–229 read DQTQDTE with entropy 0.011. Across 19,000 alleles it barely moves — which is why one CD8 works on every person's class I.

📉Half the table is one plate

57% of class I records sit on HLA-A*02:01 — a plate carried by only about a quarter of people. Lesson 19 counts what that mismatch costs.

⏱️Weak was the design

A TCR binds ten thousand times weaker than an antibody. Dwell time, not strength, decides the answer — which is how a single residue turns an agonist into an antagonist.

Full curriculum

01
Neither half is visible alone
Zinkernagel · Doherty 1974 · why antigen alone moves nothing
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02
Two kinds of groove — one closed, one open
Class I and class II · fragment length shows the difference directly
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03
It sits at an angle — and almost always the same one
Garboczi 1996 · Rudolph 2006 · the strange rule of docking polarity
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04
Why MHC and nothing else
Germline bias versus thymic selection · an argument that is not over
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05
CD4 and CD8 — what exactly do they hold?
Salter 1990 · Cammarota 1992 · not the groove, but the platform under it
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06
【Lab】 Opening 181,411 rows — what is in here?
VDJdb 2026-06-03 · starting with what a single row means
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07
【Lab】 One plate takes more than half
HLA-A*02:01 at 57% · and who that number erases
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08
【Lab】 The polymorphism is in the groove and nowhere else
20,000 full-length IMGT/HLA alleles · entropy, position by position
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09
【Lab】 The seven residues a coreceptor grabs
Positions 223-229 · count 19,000 alleles and the same letters come back
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10
【Lab】 Does a CD4 TCR look different from a CD8 TCR?
CDR3 length · V gene usage · the answer was 'barely'
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11
It is weak — ten thousand times weaker than an antibody
TCR-pMHC KD of 1-100 µM · and the fact that this was the design
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12
Dwell time decides the answer
Kinetic proofreading · one residue turns an agonist into an antagonist
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13
A coreceptor is an enzyme courier
The zinc clasp · CD3 ITAMs · and the place CD45 gets pushed out of
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14
How a double-positive cell picks a side
The kinetic signalling model · coreceptor reversal, a clever test
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15
Why is the reaction to someone else's plate so violent?
Alloreactivity at 1-10% · ten thousand times a normal foreign antigen · the strongest evidence in lesson 4's argument
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16
【Lab】 One receptor sees many
111,414 CDR3β sequences · 6,621 of them see two or more · the widest sees 90
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17
The plates that break the rules
HLA-E · MR1 · CD1 · nearly identical in everybody, and T cells read them anyway
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18
Take the plate away and nobody can see
174,982 class I rows all hanging off one B2M · and HLA LOH
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19
【Capstone lab】 Who can see this fragment?
Redrawing lesson 7's picture from scratch · and who that picture erased
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20
What we can say, and what we cannot
Twenty lessons summarised · what this course never touched · where to go next
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